Novel miR390-Dependent Transacting siRNA Precursors in Plants Revealed by a PCR-Based Experimental Approach and Database Analysis
Identifieur interne : 001D43 ( Main/Exploration ); précédent : 001D42; suivant : 001D44Novel miR390-Dependent Transacting siRNA Precursors in Plants Revealed by a PCR-Based Experimental Approach and Database Analysis
Auteurs : M. S. Krasnikova [Russie] ; I. A. Milyutina [Russie] ; V. K. Bobrova [Russie] ; L. V. Ozerova [Russie] ; A. V. Troitsky [Russie] ; A. G. Solovyev ; S. Y. Morozov [Russie]Source :
- Journal of Biomedicine and Biotechnology [ 1110-7243 ] ; 2009.
Abstract
TAS loci in plant genomes encode transacting small interfering RNAs (ta-siRNAs) that regulate expression of a number of genes. The function of TAS3 precursor in
Url:
DOI: 10.1155/2009/952304
PubMed: 19859540
PubMed Central: 2762245
Affiliations:
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S." last="Krasnikova">M. S. Krasnikova</name><affiliation wicri:level="1"><nlm:aff id="I1">Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya 42, 127550 Moscow, Russia</nlm:aff><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya 42, 127550 Moscow</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Milyutina, I A" sort="Milyutina, I A" uniqKey="Milyutina I" first="I. A." last="Milyutina">I. A. Milyutina</name><affiliation wicri:level="4"><nlm:aff id="I2">A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow, Russia</nlm:aff><country xml:lang="fr">Russie</country><wicri:regionArea>A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName><orgName type="university">Université d'État de Moscou</orgName><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Bobrova, V K" sort="Bobrova, V K" uniqKey="Bobrova V" first="V. K." last="Bobrova">V. K. Bobrova</name><affiliation wicri:level="4"><nlm:aff id="I2">A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow, Russia</nlm:aff><country xml:lang="fr">Russie</country><wicri:regionArea>A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName><orgName type="university">Université d'État de Moscou</orgName><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Ozerova, L V" sort="Ozerova, L V" uniqKey="Ozerova L" first="L. V." last="Ozerova">L. V. Ozerova</name><affiliation wicri:level="1"><nlm:aff id="I3">Main Botanic Garden Russian Academy of Sciences, Botanicheskaya 4, 127276 Moscow, Russia</nlm:aff><country xml:lang="fr">Russie</country><wicri:regionArea>Main Botanic Garden Russian Academy of Sciences, Botanicheskaya 4, 127276 Moscow</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Troitsky, A V" sort="Troitsky, A V" uniqKey="Troitsky A" first="A. V." last="Troitsky">A. V. Troitsky</name><affiliation wicri:level="4"><nlm:aff id="I2">A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow, Russia</nlm:aff><country xml:lang="fr">Russie</country><wicri:regionArea>A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName><orgName type="university">Université d'État de Moscou</orgName><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Solovyev, A G" sort="Solovyev, A G" uniqKey="Solovyev A" first="A. G." last="Solovyev">A. G. Solovyev</name><affiliation><nlm:aff>NONE</nlm:aff></affiliation><affiliation><nlm:aff>NONE</nlm:aff></affiliation></author><author><name sortKey="Morozov, S Y" sort="Morozov, S Y" uniqKey="Morozov S" first="S. Y." last="Morozov">S. Y. Morozov</name><affiliation wicri:level="4"><nlm:aff id="I2">A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow, Russia</nlm:aff><country xml:lang="fr">Russie</country><wicri:regionArea>A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Moscow</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName><orgName type="university">Université d'État de Moscou</orgName><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author></analytic><series><title level="j">Journal of Biomedicine and Biotechnology</title><idno type="ISSN">1110-7243</idno><idno type="eISSN">1110-7251</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>TAS loci in plant genomes encode transacting small interfering RNAs (ta-siRNAs) that regulate expression of a number of genes. The function of TAS3 precursor in <italic>Arabidopsis thaliana</italic> is controlled by two miR390 target sites flanking two ta-siARF sequences targeting mRNAs of ARF transcription factors. Cleavage of the 3′-miR390-site initiates ta-siRNAs biogenesis. Here we describe the new method for identification of plant ta-siRNA precursors based on PCR with oligodeoxyribonucleotide primers mimicking miR390. The method was found to be efficient for dicotiledonous plants, cycads, and mosses. Based on sequences of amplified loci and a database analysis, a novel type of miR390-dependent TAS sequences was identified in dicots. These TAS loci are characterized by a smaller distance between miR390 sites compared to TAS3, a single copy of ta-siARF, and a sequence conservation pattern pointing to the possibility that processing of novel TAS-like locus is initiated by cleavage of the 5′-terminal miR390 target site.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Baulcombe, D" uniqKey="Baulcombe D">D Baulcombe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vazquez, F" uniqKey="Vazquez F">F Vazquez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaucheret, H" uniqKey="Vaucheret H">H Vaucheret</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaucheret, H" uniqKey="Vaucheret H">H Vaucheret</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bonnet, E" uniqKey="Bonnet E">E Bonnet</name></author><author><name sortKey="Van De 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sort="Solovyev, A G" uniqKey="Solovyev A" first="A. G." last="Solovyev">A. G. Solovyev</name></noCountry><country name="Russie"><region name="District fédéral central"><name sortKey="Krasnikova, M S" sort="Krasnikova, M S" uniqKey="Krasnikova M" first="M. S." last="Krasnikova">M. S. Krasnikova</name></region><name sortKey="Bobrova, V K" sort="Bobrova, V K" uniqKey="Bobrova V" first="V. K." last="Bobrova">V. K. Bobrova</name><name sortKey="Milyutina, I A" sort="Milyutina, I A" uniqKey="Milyutina I" first="I. A." last="Milyutina">I. A. Milyutina</name><name sortKey="Morozov, S Y" sort="Morozov, S Y" uniqKey="Morozov S" first="S. Y." last="Morozov">S. Y. Morozov</name><name sortKey="Ozerova, L V" sort="Ozerova, L V" uniqKey="Ozerova L" first="L. V." last="Ozerova">L. V. Ozerova</name><name sortKey="Troitsky, A V" sort="Troitsky, A V" uniqKey="Troitsky A" first="A. V." last="Troitsky">A. V. Troitsky</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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